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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006801.1_900_1228_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
900 - 1228
Intron Length:
329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACGA
5'SS Class:
major
3'SS Sequence:
TTTCCCTCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
TTTTTTTTCTCT
Flanking Amino Acid:
TSLAWSADGQTLFAGYTDNL
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
62.6
43.8
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
82
0.72
0.7
77.2
24.7
Minor 5ss
36.9
-1.5
3.1
48.7
46.8
Minor BPS
45.5
-0.2
3.6
82.72
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022454
Chromosome:
PEDO01006801.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044393
263 - 1258
996