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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006802.1_602_786_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
602 - 786
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGGGT
5'SS Class:
major
3'SS Sequence:
CCGCTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
TGGCCCTGACCC
Flanking Amino Acid:
SSEATLLSLKAAELASELCS
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68
43.2
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
70.7
0.47
0.8
64.7
30.8
Minor 5ss
29.9
-2.3
3.8
46.9
48.5
Minor BPS
50.1
-0
1.8
61.79
43

Associated Gene:

Gene:
ID3
Ensembl Gene ID:
ENSAPLG00000020505
Chromosome:
PEDO01006802.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020247
21 - 995
975