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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006810.1_2345_4835_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2345 - 4835
Intron Length:
2491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTACTTCAAACT
Flanking Amino Acid:
WECDDNVAMCESIEEKCQKM
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.2
35.8
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
26.7
-2.7
3
28.5
38.4
Minor BPS
47.7
-0
1.9
70.42
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021833
Chromosome:
PEDO01006810.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028573
2088 - 8520
6433