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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006829.1_1286_3041_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1286 - 3041
Intron Length:
1756

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTA|GCAAGCCCA
5'SS Class:
major
3'SS Sequence:
TATCTTTTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTTTATCT
Flanking Amino Acid:
SSSSTGVWSSKPCAASVTIP
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.3
58.2
40.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
83.8
0.76
0.8
76.7
37
Minor 5ss
29.7
-2.3
4
41.6
39.9
Minor BPS
68.7
0.66
1.5
83.95
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018955
Chromosome:
PEDO01006829.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021817
1107 - 3084
1978