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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006830.1_1880_2126_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

1880 - 2126

Intron Length:

247

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTCCC

5'SS Class:

strong_major

3'SS Sequence:

CCGGCTGGCGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCCCAG

U12 Branch Point Sequence:

GGGTGCCCAGGC

Flanking Amino Acid:

SALDAVPELTNPLGDKEKVT

Intron Amino Acid Position:

198

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

0.9

72.6

37.3

Major BPS

43.3

-0.4

1.6

52.1

45.2

Major PPT

55.3

0.12

48.7

39.2

Minor 5ss

37.2

-1.4

2.9

46.5

35.3

Minor BPS

31.8

-1.4

2.2

36.88

40.1

Associated Gene:

Gene:

PNKD

Ensembl Gene ID:

ENSAPLG00000026030

Chromosome:

PEDO01006830.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039300

661 - 2514

1854

ENSAPLT00000033976

857 - 2560

1704

ENSAPLT00000021992

213 - 2514

2302