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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006834.1_2657_4343_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
2657 - 4343
Intron Length:
1687

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTT|GCGAGTATT
5'SS Class:
major
3'SS Sequence:
CACCTTGGATGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCCCAG
U12 Branch Point Sequence:
CCACCTTGGATG
Flanking Amino Acid:
QAPGKGLEYVSGGGRVSPGG
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.3
0.29
1.4
79.5
33.6
Major BPS
44.4
-0.3
1.6
54.3
42.9
Major PPT
44.9
-0.2
1.7
50.2
42.5
Minor 5ss
28.5
-2.5
4
48.3
41.8
Minor BPS
44.7
-0.5
1.5
40.58
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027840
Chromosome:
PEDO01006834.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030536
2192 - 4400
2209