Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006834.1_2908_3013_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2908 - 3013

Intron Length:

106

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGGCCC

5'SS Class:

major

3'SS Sequence:

CCTTCCTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTAAG

U12 Branch Point Sequence:

TGCGGCTAAGCC

Flanking Amino Acid:

ALLLLLAAVPGLRAAATLDE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.7

0.65

1.1

64.9

37.8

Major BPS

45.1

-0.3

1.7

49.3

44.7

Major PPT

77.2

0.61

0.7

68.9

31.5

Minor 5ss

30.6

-2.2

3.5

42.1

44.9

Minor BPS

41.1

-0.7

2.2

50.27

46.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021802

Chromosome:

PEDO01006834.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026796

2853 - 5062

2210