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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006856.1_587_1581_R

Intron Information:

Intron Rank:
141255
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
587 - 1581
Intron Length:
995

Sequence Information:

Terminal Dinucleotides:
GT-AC
5'SS Sequence:
TTT|GTAAATATT
5'SS Class:
major
3'SS Sequence:
TCATTTTTGCAAC|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTTTGTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
78.9
34.3
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
38.6
-0.6
3.2
59.7
45.1
Minor 5ss
43.6
-0.7
3
65.8
39.5
Minor BPS
48.9
-0
2.3
78.3
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023339
Chromosome:
PEDO01006856.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020113
21 - 2056
2036