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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006860.1_5698_5931_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5698 - 5931

Intron Length:

234

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTCAC

5'SS Class:

strong_major

3'SS Sequence:

CCGGTGCCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGCCAC

U12 Branch Point Sequence:

CCTGCCACCACC

Flanking Amino Acid:

ESPTCSGMEIELLAQDVLRS

Intron Amino Acid Position:

130

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

68.8

Major BPS

-0.2

1.4

53.5

Major PPT

61.4

0.26

0.9

53.6

36.7

Minor 5ss

29.6

-2.3

2.8

36.4

40.6

Minor BPS

41.3

-0.7

2.2

Associated Gene:

Gene:

RORC

Ensembl Gene ID:

ENSAPLG00000021217

Chromosome:

PEDO01006860.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047867

4770 - 8288

3519

ENSAPLT00000022619

4770 - 8288

3519