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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006860.1_6054_6138_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6054 - 6138

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGACC

5'SS Class:

strong_major

3'SS Sequence:

GGGGGGGCCGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGGTGAC

U12 Branch Point Sequence:

GGTGACGGAGCG

Flanking Amino Acid:

REEICAYQRKPMQEMWERCA

Intron Amino Acid Position:

171

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.85

0.9

75.6

33.8

Major BPS

48.9

-0

1.3

40.5

41.4

Major PPT

48.2

-0.1

1.1

34.8

41.1

Minor 5ss

28.1

-2.5

34.6

41.4

Minor BPS

34.8

-1.2

2.2

38.99

43.5

Associated Gene:

Gene:

RORC

Ensembl Gene ID:

ENSAPLG00000021217

Chromosome:

PEDO01006860.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047867

4770 - 8288

3519

ENSAPLT00000022619

4770 - 8288

3519