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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006860.1_6272_6864_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6272 - 6864

Intron Length:

593

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTACGGCCC

5'SS Class:

major

3'SS Sequence:

TCCCTGTCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

CTGTCCCCATCC

Flanking Amino Acid:

QNDQIVLLKAGAMEVVLVRM

Intron Amino Acid Position:

215

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.6

0.44

1.1

41.7

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

72.9

0.52

0.8

64.4

36.6

Minor 5ss

31.4

-2.1

3.5

43.4

43.9

Minor BPS

45.7

-0.3

2.1

59.24

45.6

Associated Gene:

Gene:

RORC

Ensembl Gene ID:

ENSAPLG00000021217

Chromosome:

PEDO01006860.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047867

4770 - 8288

3519

ENSAPLT00000022619

4770 - 8288

3519