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Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006860.1_7177_7715_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7177 - 7715

Intron Length:

539

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCA|GTGAGGGCC

5'SS Class:

major

3'SS Sequence:

GCCGTGTCCGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCCCAC

U12 Branch Point Sequence:

CCGCCCCCACGT

Flanking Amino Acid:

FLCAIVLVNANRPWLQEQAK

Intron Amino Acid Position:

288

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.35

1.1

56.7

36.7

Major BPS

-0.3

1.2

49.7

35.3

Major PPT

64.3

0.32

56.8

38.7

Minor 5ss

27.2

-2.6

3.5

38.8

40.6

Minor BPS

35.6

-1

2.1

45.71

45.5

Associated Gene:

Gene:

RORC

Ensembl Gene ID:

ENSAPLG00000021217

Chromosome:

PEDO01006860.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000047867

4770 - 8288

3519