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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006882.1_622_697_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
622 - 697
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
GCTCGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCAAAT
U12 Branch Point Sequence:
CCCCGCTGAGCC
Flanking Amino Acid:
QLRHRLRGHGGEHGDGSLLQ
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.9
42.8
Major BPS
48.8
-0
1.2
55.2
38.9
Major PPT
65.9
0.36
0.9
58
33.2
Minor 5ss
27.7
-2.6
2.7
23.9
36.9
Minor BPS
40.7
-0.7
2
44.11
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024360
Chromosome:
PEDO01006882.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046930
21 - 2329
2309