Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006900.1_410_673_F

Intron Information:

Intron Rank:

126678

Intron Class:

major

Intron Phase:

Intron Coordinates:

410 - 673

Intron Length:

264

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGGGAG

5'SS Class:

strong_major

3'SS Sequence:

GTTCTTCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACCTCAG

U12 Branch Point Sequence:

CGCACCTCAGCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

69.1

37.5

Major BPS

49.8

-0

1.5

59.3

39.1

Major PPT

86.3

0.82

0.8

80.9

31.1

Minor 5ss

23.1

-3.1

3.2

27.7

44.2

Minor BPS

46.2

-0.3

1.8

52.24

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018282

Chromosome:

PEDO01006900.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022190

21 - 2058

2038