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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006966.1_476_576_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
476 - 576
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGTG
5'SS Class:
strong_major
3'SS Sequence:
CCGTACCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
CTCTCCGTACCT
Flanking Amino Acid:
GPCHGCPCKECGRRLNKGDP
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
73
38.2
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
72.9
0.52
0.9
65.4
35.8
Minor 5ss
27.4
-2.6
3.5
36.8
47.7
Minor BPS
51.6
0.13
2.3
75.03
47.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030562
Chromosome:
PEDO01006966.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024539
320 - 1270
951