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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006977.1_365_725_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
365 - 725
Intron Length:
361

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGGGGG
5'SS Class:
major
3'SS Sequence:
CTTTTCCTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
AGCTTTTCAGGC
Flanking Amino Acid:
DPTGELEYPTKVARFSSVSH
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.1
52.6
44.7
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
85.4
0.8
0.7
80.7
24.4
Minor 5ss
29.3
-2.4
3.7
36.9
42.1
Minor BPS
40.8
-0.7
1.8
44.74
37.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013217
Chromosome:
PEDO01006977.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013755
58 - 811
754