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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_17314_17434_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17314 - 17434
Intron Length:
121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGAGG
5'SS Class:
major
3'SS Sequence:
CTCTCCCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CACTTCTCACGG
Flanking Amino Acid:
VSALPVVDDSGRVVDIYSKF
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
60.4
45.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
73.2
0.52
0.7
65.4
30.4
Minor 5ss
25.8
-2.8
2.9
22.4
37.3
Minor BPS
40.4
-0.8
2
39.43
44.5

Associated Gene:

Gene:
PRKAG1
Ensembl Gene ID:
ENSAPLG00000030970
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045895
16299 - 19903
3605
ENSAPLT00000040693
16299 - 19903
3605
ENSAPLT00000038862
16299 - 19903
3605