Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_18707_18834_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

18707 - 18834

Intron Length:

128

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGGGGCCG

5'SS Class:

major

3'SS Sequence:

CCCCCCACGGCAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTGACAC

U12 Branch Point Sequence:

CCCCCCGTGACA

Flanking Amino Acid:

QARRLRHFPAGEEGFLRAGH

Intron Amino Acid Position:

188

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.1

44.7

Major BPS

-0.2

1.3

52.4

43.3

Major PPT

59.4

0.21

0.9

29.3

Minor 5ss

24.2

-3

3.2

29.7

43.3

Minor BPS

47.4

-0.2

2.1

55.26

Associated Gene:

Gene:

PRKAG1

Ensembl Gene ID:

ENSAPLG00000030970

Chromosome:

PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045895

16299 - 19903

3605

ENSAPLT00000040693

16299 - 19903

3605

ENSAPLT00000038862

16299 - 19903

3605