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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_30587_30714_R

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30587 - 30714
Intron Length:
128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGGCGG
5'SS Class:
major
3'SS Sequence:
CCGCTCCCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCGTGAC
U12 Branch Point Sequence:
CCGTGCGTGACT
Flanking Amino Acid:
SSRRIPKGEELTYDYQFDFE
Intron Amino Acid Position:
5267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1.3
55.2
49
Major BPS
46.4
-0.2
1.4
36.7
42.3
Major PPT
67.2
0.39
0.8
57.6
33.3
Minor 5ss
25.6
-2.8
3
30.5
42.7
Minor BPS
45
-0.3
2.4
62.04
48.4

Associated Gene:

Gene:
KMT2D
Ensembl Gene ID:
ENSAPLG00000029981
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039660
29904 - 54204
24301
ENSAPLT00000032026
29904 - 54204
24301
ENSAPLT00000026084
29904 - 54204
24301
ENSAPLT00000017431
29904 - 54204
24301