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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_30824_30914_R

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30824 - 30914
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGTG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCCGAT
U12 Branch Point Sequence:
CGGGGCCGATCC
Flanking Amino Acid:
IDATLTGGPARYINHSCAPN
Intron Amino Acid Position:
5230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
72.2
39.5
Major BPS
44.4
-0.3
1.4
37.9
43.6
Major PPT
66.9
0.38
0.7
57.1
27.1
Minor 5ss
34.5
-1.8
3.4
45.9
49.3
Minor BPS
33
-1.3
2
36.14
40.6

Associated Gene:

Gene:
KMT2D
Ensembl Gene ID:
ENSAPLG00000029981
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032026
29904 - 54204
24301
ENSAPLT00000026084
29904 - 54204
24301
ENSAPLT00000017431
29904 - 54204
24301
ENSAPLT00000039660
29904 - 54204
24301