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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_31624_31784_R

Intron Information:

Intron Rank:
44
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31624 - 31784
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAGGTGCC
5'SS Class:
major
3'SS Sequence:
CTTTTTTTGGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTCAA
U12 Branch Point Sequence:
CTTTTTTTGGCA
Flanking Amino Acid:
VHAVLRIAESLPGVESCQNY
Intron Amino Acid Position:
5067

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
68.2
38.6
Major BPS
60.8
0.27
1.1
63.2
34.1
Major PPT
85.5
0.8
0.9
84
31
Minor 5ss
33
-1.9
3.4
44.8
43.3
Minor BPS
44.9
-0.4
3.4
68.82
38.3

Associated Gene:

Gene:
KMT2D
Ensembl Gene ID:
ENSAPLG00000029981
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032026
29904 - 54204
24301
ENSAPLT00000026084
29904 - 54204
24301
ENSAPLT00000017431
29904 - 54204
24301
ENSAPLT00000039660
29904 - 54204
24301