About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_34960_35069_R

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34960 - 35069
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGCCAC
U12 Branch Point Sequence:
GACCCCCGACCC
Flanking Amino Acid:
EPAREPHGQKDTSAVEVKSL
Intron Amino Acid Position:
4402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
38.1
Major BPS
43.9
-0.3
1.4
49.9
45.3
Major PPT
79.4
0.66
0.7
73.8
24.3
Minor 5ss
42
-0.9
3
55
49.2
Minor BPS
41.4
-0.6
1.9
47.9
40.8

Associated Gene:

Gene:
KMT2D
Ensembl Gene ID:
ENSAPLG00000029981
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017431
29904 - 54204
24301
ENSAPLT00000039660
29904 - 54204
24301
ENSAPLT00000032026
29904 - 54204
24301
ENSAPLT00000026084
29904 - 54204
24301