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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_35489_35565_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35489 - 35565
Intron Length:
77

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGGA
5'SS Class:
major
3'SS Sequence:
CTCTGCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
CCCCGCTCACCT
Flanking Amino Acid:
GEALMKQLKQELSLLPLTEP
Intron Amino Acid Position:
4295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
64.2
42.1
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
71.1
0.48
0.8
61.7
35
Minor 5ss
27.5
-2.6
3.6
38.1
46.8
Minor BPS
41
-0.6
2.1
52.75
48.1

Associated Gene:

Gene:
KMT2D
Ensembl Gene ID:
ENSAPLG00000029981
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039660
29904 - 54204
24301
ENSAPLT00000032026
29904 - 54204
24301
ENSAPLT00000026084
29904 - 54204
24301
ENSAPLT00000017431
29904 - 54204
24301