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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_35710_35798_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
35710 - 35798
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
GTGCTCAGCACT
Flanking Amino Acid:
RPQSVLLGREDPSIARKPAA
Intron Amino Acid Position:
4247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
68.8
43.8
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
84.7
0.78
0.7
77.6
31.2
Minor 5ss
33.3
-1.9
2.8
39.7
45.9
Minor BPS
41.8
-0.5
2
59.86
43

Associated Gene:

Gene:
KMT2D
Ensembl Gene ID:
ENSAPLG00000029981
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026084
29904 - 54204
24301
ENSAPLT00000017431
29904 - 54204
24301
ENSAPLT00000039660
29904 - 54204
24301
ENSAPLT00000032026
29904 - 54204
24301