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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_38754_38835_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
38754 - 38835
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CGGTGCTGACAC
Flanking Amino Acid:
QSKIQKQLDQVRKQQKEHTN
Intron Amino Acid Position:
3262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
73.2
34.8
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
70.9
0.47
0.7
64.7
23.9
Minor 5ss
30.5
-2.2
3.8
47.1
48.5
Minor BPS
39.8
-0.7
2.1
44.86
43.1

Associated Gene:

Gene:
KMT2D
Ensembl Gene ID:
ENSAPLG00000029981
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032026
29904 - 54204
24301
ENSAPLT00000026084
29904 - 54204
24301
ENSAPLT00000017431
29904 - 54204
24301
ENSAPLT00000039660
29904 - 54204
24301