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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_39258_39425_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
39258 - 39425
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTGTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTCAC
U12 Branch Point Sequence:
ATGTCACCAACG
Flanking Amino Acid:
QNHMLAGSGQERSGTDPTQA
Intron Amino Acid Position:
3162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.8
38.7
Major BPS
66.1
0.4
1.2
69.1
37.9
Major PPT
66.7
0.38
1
60.1
40.4
Minor 5ss
29.7
-2.3
2.6
33.4
41.8
Minor BPS
45.6
-0.4
2.1
56.54
44.2

Associated Gene:

Gene:
KMT2D
Ensembl Gene ID:
ENSAPLG00000029981
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026084
29904 - 54204
24301
ENSAPLT00000017431
29904 - 54204
24301
ENSAPLT00000039660
29904 - 54204
24301
ENSAPLT00000032026
29904 - 54204
24301