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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_39514_39604_R

Intron Information:

Intron Rank:
30
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
39514 - 39604
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
CACCTCCCCAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
TCTCCCTGCACC
Flanking Amino Acid:
GSIGVAPGMNRQQVSLLAQR
Intron Amino Acid Position:
3132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.3
31.1
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
56.7
0.15
1
55.5
27.7
Minor 5ss
28.5
-2.5
3.5
37.1
47.5
Minor BPS
54.6
0.13
2
68.78
42.5

Associated Gene:

Gene:
KMT2D
Ensembl Gene ID:
ENSAPLG00000029981
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026084
29904 - 54204
24301
ENSAPLT00000017431
29904 - 54204
24301
ENSAPLT00000039660
29904 - 54204
24301
ENSAPLT00000032026
29904 - 54204
24301