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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_42320_42403_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42320 - 42403
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGACAT
U12 Branch Point Sequence:
GCCACGGTGACA
Flanking Amino Acid:
RGMGAYQPAQDKGLLGSLAT
Intron Amino Acid Position:
2354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
49.9
-0
1.4
60.7
45.9
Major PPT
85.6
0.8
0.6
84.6
23.2
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
39.4
-0.8
2.5
47.26
43

Associated Gene:

Gene:
KMT2D
Ensembl Gene ID:
ENSAPLG00000029981
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039660
29904 - 54204
24301
ENSAPLT00000032026
29904 - 54204
24301
ENSAPLT00000026084
29904 - 54204
24301
ENSAPLT00000017431
29904 - 54204
24301