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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_42578_42837_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
42578 - 42837
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TCGCTCCTAATT
Flanking Amino Acid:
SPSELEKQRQRQRLRELLIR
Intron Amino Acid Position:
2296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
76.8
0.6
0.8
68.8
37.2
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
53.9
0.2
1.7
69.37
42

Associated Gene:

Gene:
KMT2D
Ensembl Gene ID:
ENSAPLG00000029981
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039660
29904 - 54204
24301
ENSAPLT00000032026
29904 - 54204
24301
ENSAPLT00000026084
29904 - 54204
24301
ENSAPLT00000017431
29904 - 54204
24301