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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_46054_46161_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46054 - 46161
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
CCTTGCTCAGCT
Flanking Amino Acid:
SSDLDKIPTEELPKMESKDV
Intron Amino Acid Position:
1494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.8
76.4
32.8
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
75.5
0.57
0.8
69.7
31
Minor 5ss
28.3
-2.5
3.6
40.1
46.3
Minor BPS
47.3
-0.1
2.2
67.75
48.7

Associated Gene:

Gene:
KMT2D
Ensembl Gene ID:
ENSAPLG00000029981
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032026
29904 - 54204
24301
ENSAPLT00000026084
29904 - 54204
24301
ENSAPLT00000017431
29904 - 54204
24301
ENSAPLT00000039660
29904 - 54204
24301