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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_47196_47374_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47196 - 47374
Intron Length:
179

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGGACC
5'SS Class:
major
3'SS Sequence:
TTGCCGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
AGGAATTTAATG
Flanking Amino Acid:
GLSAEGHPEDGTPGDLPAEG
Intron Amino Acid Position:
1329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.1
65.3
37.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.7
0.56
0.9
69.3
36.8
Minor 5ss
32.3
-2
3.3
40.3
40.1
Minor BPS
48.3
-0.2
1.6
48.16
39.4

Associated Gene:

Gene:
KMT2D
Ensembl Gene ID:
ENSAPLG00000029981
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032026
29904 - 54204
24301
ENSAPLT00000026084
29904 - 54204
24301
ENSAPLT00000017431
29904 - 54204
24301
ENSAPLT00000039660
29904 - 54204
24301