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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_47492_47583_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47492 - 47583
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GCCCCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
CCCCCCTCACCT
Flanking Amino Acid:
KKRKRKPYRPGIGGFMVRQR
Intron Amino Acid Position:
1290

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
64.2
0.32
0.8
53.7
31
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
47.5
-0.1
1.9
61.08
48.3

Associated Gene:

Gene:
KMT2D
Ensembl Gene ID:
ENSAPLG00000029981
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017431
29904 - 54204
24301
ENSAPLT00000039660
29904 - 54204
24301
ENSAPLT00000032026
29904 - 54204
24301
ENSAPLT00000026084
29904 - 54204
24301