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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_48150_48254_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48150 - 48254
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
TTTTCCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTCAC
U12 Branch Point Sequence:
ACGGCCTCACCT
Flanking Amino Acid:
ACQPYVVKPAVPAPPSEISA
Intron Amino Acid Position:
1155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
66.2
39.6
Major BPS
54.7
0.12
1.2
59.2
39.1
Major PPT
87.4
0.84
0.6
82
22.8
Minor 5ss
35.7
-1.6
2.9
45.4
42.5
Minor BPS
47.4
-0.1
1.9
62.03
47.8

Associated Gene:

Gene:
KMT2D
Ensembl Gene ID:
ENSAPLG00000029981
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039660
29904 - 54204
24301
ENSAPLT00000032026
29904 - 54204
24301
ENSAPLT00000026084
29904 - 54204
24301
ENSAPLT00000017431
29904 - 54204
24301