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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_51221_51304_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
51221 - 51304
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTGCCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCGTCAC
U12 Branch Point Sequence:
GCTGCGTCACCG
Flanking Amino Acid:
EAAPPPPAPPDLCAVSPARP
Intron Amino Acid Position:
655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
74.8
38.1
Major BPS
47.8
-0.1
1.4
51
44.3
Major PPT
69
0.43
0.9
58.8
38.3
Minor 5ss
37
-1.5
3.2
48.2
47.9
Minor BPS
38.8
-0.9
2.4
43.65
47.8

Associated Gene:

Gene:
KMT2D
Ensembl Gene ID:
ENSAPLG00000029981
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017431
29904 - 54204
24301
ENSAPLT00000039660
29904 - 54204
24301
ENSAPLT00000032026
29904 - 54204
24301
ENSAPLT00000026084
29904 - 54204
24301