About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_52520_52646_R


Intron Information:

Intron Rank:
4

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
52520 - 52646

Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GGC|GTGAGTTGG

5'SS Class:
major

3'SS Sequence:
GCCCCCCATCCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CCCTCAC

U12 Branch Point Sequence:
GCTCCCCTCACT

Flanking Amino Acid:
QAPPPDPAAQALVAPDRSGL

Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
63.3
0.31
1.3
56.7
45

Major BPS
60.1
0.25
1.1
62.9
34.3

Major PPT
64.4
0.33
0.9
54.2
35.6

Minor 5ss
35.1
-1.7
2.8
35.7
41.3

Minor BPS
49.6
0.05
2.1
71.09
45.2

Associated Gene:

Gene:
KMT2D

Ensembl Gene ID:

Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

29904 - 54204
24301

29904 - 54204
24301

29904 - 54204
24301

29904 - 54204
24301