About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_53776_53901_R


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
5UTR

Intron Coordinates:
53776 - 53901

Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CGG|GTGAGTGGG

5'SS Class:
major

3'SS Sequence:
CCCCTCCCCGCAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
ATCCCAT

U12 Branch Point Sequence:
GGTTCCTGACGC

Flanking Amino Acid:
5UTR

Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.3
0.69
1
63.1
43.4

Major BPS
63.5
0.33
1.2
72.5
34.6

Major PPT
70.9
0.47
0.7
64.7
23.9

Minor 5ss
26.2
-2.7
2.9
22.9
37.3

Minor BPS
48
-0.1
2
60.92
43.8

Associated Gene:

Gene:
KMT2D

Ensembl Gene ID:

Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

29904 - 54204
24301