Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_71561_71643_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

71561 - 71643

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGGACG

5'SS Class:

major

3'SS Sequence:

CCTCTGCACCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTCAC

U12 Branch Point Sequence:

TGCCTCTCACCC

Flanking Amino Acid:

AVQEELLRAFGLHKLPLPVP

Intron Amino Acid Position:

420

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.8

0.61

63.4

42.4

Major BPS

72.7

0.56

30.1

Major PPT

66.4

0.37

0.9

57.5

37.7

Minor 5ss

27.6

-2.6

32.9

41.7

Minor BPS

46.9

-0.2

1.8

56.33

Associated Gene:

Gene:

LMBR1L

Ensembl Gene ID:

ENSAPLG00000009662

Chromosome:

PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048070

71313 - 76954

5642

ENSAPLT00000023099

71313 - 76954

5642

ENSAPLT00000010093

71502 - 76954

5453