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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_7170_7475_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7170 - 7475
Intron Length:
306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCGTGAG
U12 Branch Point Sequence:
CTGGCGTGAGCC
Flanking Amino Acid:
TLAVNNSGRWWGIINVASST
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
40.9
-0.5
1.7
30.7
44
Major PPT
64.9
0.34
1
57.8
43.2
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
40.7
-0.7
2.3
50.56
46.2

Associated Gene:

Gene:
WNT1
Ensembl Gene ID:
ENSAPLG00000018831
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037085
6888 - 9177
2290