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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_72232_72330_R

Intron Information:

Intron Rank:
12
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
72232 - 72330
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTATCCTTC
5'SS Class:
strong_minor
3'SS Sequence:
GCCCCCCTCGCAG|C
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
CTCTCCTTAACG
Flanking Amino Acid:
FGAALQVVLIFYLMLSSVVG
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
49.8
-0
1.2
51.5
40.4
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
68
0.41
0.8
60.7
29.3
Minor 5ss
94
1.48
0.8
90.4
20.7
Minor BPS
79.2
0.78
1.3
75.03
43.2

Associated Gene:

Gene:
LMBR1L
Ensembl Gene ID:
ENSAPLG00000009662
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023099
71313 - 76954
5642
ENSAPLT00000010093
71502 - 76954
5453
ENSAPLT00000048070
71313 - 76954
5642