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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_72405_72486_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72405 - 72486
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGGG
5'SS Class:
major
3'SS Sequence:
TCCTGCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAC
U12 Branch Point Sequence:
GTTCCCACAAAG
Flanking Amino Acid:
DDAAMPRGIQDAPLGQVSFS
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.2
58.2
46.8
Major BPS
62.4
0.31
1.2
72.4
34.6
Major PPT
71.9
0.49
0.8
65.3
30.5
Minor 5ss
36.6
-1.5
3.4
49.7
46.5
Minor BPS
46.7
-0.3
2
57.15
43.2

Associated Gene:

Gene:
LMBR1L
Ensembl Gene ID:
ENSAPLG00000009662
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023099
71313 - 76954
5642
ENSAPLT00000010093
71502 - 76954
5453
ENSAPLT00000048070
71313 - 76954
5642