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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_73757_73830_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73757 - 73830
Intron Length:
74

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGGC
5'SS Class:
strong_major
3'SS Sequence:
CCCGTTCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TGCTGCTGATCC
Flanking Amino Acid:
ESEGFAGSKKGIMARVYETS
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
1
71.4
40
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
71.7
0.49
0.8
68.6
31.9
Minor 5ss
32
-2.1
3.3
44
43.8
Minor BPS
46.7
-0.2
2.1
59.84
45

Associated Gene:

Gene:
LMBR1L
Ensembl Gene ID:
ENSAPLG00000009662
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048070
71313 - 76954
5642
ENSAPLT00000023099
71313 - 76954
5642
ENSAPLT00000010093
71502 - 76954
5453