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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_73935_74023_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
73935 - 74023
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTGCA
5'SS Class:
major
3'SS Sequence:
CTGTCCCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
CTCACCCTATTC
Flanking Amino Acid:
IQWLNGSLIHGLWNLVFLFS
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
63.8
36.3
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
74.4
0.55
0.8
65.5
36.1
Minor 5ss
26.3
-2.7
3.2
28.7
38.5
Minor BPS
45.9
-0.3
1.9
55.35
43.3

Associated Gene:

Gene:
LMBR1L
Ensembl Gene ID:
ENSAPLG00000009662
Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010093
71502 - 76954
5453
ENSAPLT00000048070
71313 - 76954
5642
ENSAPLT00000023099
71313 - 76954
5642