About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01006997.1_8176_8429_F


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
8176 - 8429

Intron Length:
254

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ATG|GTGAGGGCA

5'SS Class:
major

3'SS Sequence:
CCTCTCCCCACAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TGCTCAC

U12 Branch Point Sequence:
CTCTCCCCACAG

Flanking Amino Acid:
NLHNNEAGRMTVFSEMRQEC

Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77.1
0.64
1
64.5
35

Major BPS
69.8
0.49
1.1
71.3
36.7

Major PPT
74.9
0.56
0.7
68.3
25.5

Minor 5ss
24.2
-3
3.2
26.5
38

Minor BPS
40.1
-0.8
2.1
45.33
46.6

Associated Gene:

Gene:
WNT1

Ensembl Gene ID:

Chromosome:
PEDO01006997.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

6888 - 9177
2290

6888 - 9177
2290