Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007025.1_255_1139_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

255 - 1139

Intron Length:

885

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

GAG|GCGAGGTGA

5'SS Class:

strong_major

3'SS Sequence:

CTGTGGGTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTGAT

U12 Branch Point Sequence:

GCTGTCTGATGT

Flanking Amino Acid:

ATQLSSACGEIIQMLREYLD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

64.3

40.1

Major BPS

73.6

0.59

1.2

65.3

43.7

Major PPT

69.7

0.44

1.1

64.9

45.6

Minor 5ss

20.3

-3.4

3.8

43.5

Minor BPS

42.5

-0.4

56.47

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010009

Chromosome:

PEDO01007025.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010415

9 - 1268

1260