About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007028.1_230_439_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
230 - 439
Intron Length:
210

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
AGACACTTAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
AGACACTTAACA
Flanking Amino Acid:
IFPFEFDTTTRLVVCMSLLC
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
58.8
0.2
1.1
51.3
41.7
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
61.7
0.36
1.5
66.87
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026988
Chromosome:
PEDO01007028.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019232
148 - 1781
1634