Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007047.1_524_599_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

524 - 599

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTGAGACCT

5'SS Class:

major

3'SS Sequence:

CAAACCCCCGCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TCCCCAA

U12 Branch Point Sequence:

GCTCCCCAAACC

Flanking Amino Acid:

LAVQLLQFNVFVSMVEPGPV

Intron Amino Acid Position:

181

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

66.3

0.38

1.1

59.9

38.6

Major BPS

50.5

0.01

1.3

60.6

37.4

Major PPT

59.5

0.22

0.9

51.1

33.3

Minor 5ss

31.7

-2.1

3.2

46.8

42.3

Minor BPS

48.4

-0.1

61.63

43.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023715

Chromosome:

PEDO01007047.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030630

303 - 1889

1587