Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007050.1_2828_2965_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2828 - 2965

Intron Length:

138

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGCGCC

5'SS Class:

major

3'SS Sequence:

ACCAATCCCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACCAAT

U12 Branch Point Sequence:

AGGGCACCAATC

Flanking Amino Acid:

QIMELLVERFGAKQNLRDYS

Intron Amino Acid Position:

276

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.7

0.58

60.6

38.8

Major BPS

51.7

0.04

1.2

60.3

34.2

Major PPT

62.2

0.27

0.9

53.6

35.6

Minor 5ss

32.6

-2

3.3

43.1

44.2

Minor BPS

38.7

-0.8

1.9

43.89

37.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028877

Chromosome:

PEDO01007050.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027024

21 - 4395

4375

ENSAPLT00000017219

425 - 4395

3971