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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007055.1_2909_2995_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2909 - 2995
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCTGG
5'SS Class:
major
3'SS Sequence:
TCGCACCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGCAC
U12 Branch Point Sequence:
TGTGTCGCACCC
Flanking Amino Acid:
VFARLCFFSSEIPFTYRGLP
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
57
44.6
Major BPS
50
0
1.5
63.1
44.5
Major PPT
65.4
0.35
0.9
57.5
33
Minor 5ss
38.3
-1.3
3
47.3
48.1
Minor BPS
40.3
-0.7
2.3
54.33
43.9

Associated Gene:

Gene:
TMEM269
Ensembl Gene ID:
ENSAPLG00000028335
Chromosome:
PEDO01007055.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038495
21 - 4344
4324