Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007071.1_869_960_F

Intron Information:

Intron Rank:

127208

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

869 - 960

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTGGTCCA

5'SS Class:

major

3'SS Sequence:

CGCAGCACCACAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AGCCAAT

U12 Branch Point Sequence:

CCAATGGGAACG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.1

0.52

1.2

63.7

42.4

Major BPS

49.1

-0

1.3

56.5

38.8

Major PPT

55.7

0.13

0.9

46.2

35.2

Minor 5ss

29.5

-2.4

2.8

34.1

41.3

Minor BPS

32.9

-1.4

2.3

32.64

40.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018590

Chromosome:

PEDO01007071.1

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035828

21 - 1650

1630