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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_PEDO01007073.1_1741_1823_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
1741 - 1823
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGGGTGCT
5'SS Class:
weak_major
3'SS Sequence:
CCTCCACTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCATCAC
U12 Branch Point Sequence:
GTCTCCTCCACT
Flanking Amino Acid:
RRPDLPQSHQRHQASQLQQG
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.9
0.14
1.4
56.7
42.7
Major BPS
49.2
-0
1.3
53.6
41.6
Major PPT
67.8
0.4
0.8
61.8
27.5
Minor 5ss
29.4
-2.4
3.4
36
41.2
Minor BPS
57.6
0.32
2
76.98
45.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016828
Chromosome:
PEDO01007073.1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042030
21 - 2608
2588